Journal Papers
Author: M. Ujaldon

2024

2023

2022

2021

2020

2019

Energy-based Tuning of Convolutional Neural Networks on Multi-GPUs [doi]
F.M. Castro, N. Guil, M.J. Marin-Jimenez, J. Perez-Serrano, M. Ujaldon
Concurrency and Computation: Practice and Experience, 31 (21), November 2019

2018

Energy-Aware Acceleration on GPUs: Findings on a Bioinformatics Benchmark [doi]
J. Perez-Serrano, A. Rodriguez, J.F. Chico, D. Lopez-Rodriguez, M. Ujaldon
Journal on Sustainable Computing: Informatics and Systems, 20, December 2018, pp. 88-101

DNA sequences alignment in multi-GPUs: acceleration and energy payoff [doi]
J. Perez-Serrano, E. Sandes, A. Melo, M. Ujaldon
BMC Bioinformatics, 19 (Art. 421), November 2018

Energy-based Tuning of Metaheuristics for Molecular Docking on Multi-GPUs [doi]
J. Perez-Serrano, B. Imbernon, J.M. Cecilia, M. Ujaldon
Concurrency and Computation: Practice and Experience, 30 (17), September 2018

2017

2016

Legendre Moments as High Performance Bone Biomarkers: Computational Methods and GPU Acceleration [doi]
J.A. Lachiondo, M. Ujaldon, R. Berretta, P. Moscato
Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 4 (3-4), October 2016, pp. 146-163

GPU Acceleration of an Entropy-Based Model to Quantify Epistatic Interactions Between SNPs [doi]
C. Riveros, M. Ujaldon, P. Moscato
Current Bioinformatics, 11 (4), September 2016, pp. 396-407

Dynamic Load Balancing on Heterogeneous Clusters for Parallel Ant Colony Optimization [doi]
A. Llanes, J.M. Cecilia, A. Sanchez, J.M. Garcia, M. Amos, M. Ujaldon
Cluster Computing, 19 (1), March 2016, pp. 1-11

2015

Exploting Kernel Capabilities on Zernike Moments [link]
A. Ruiz, M. Ujaldon
Annals of Multicore and GPU Programming, 2 (1), 2015, pp. 15-25

2014

Comparative Evaluation of Platforms for Parallel Ant Colony Optimization [doi]
G.D. Guerrero, J.M. Cecilia, A. Llanes, J.M. Garcia, M. Amos, M. Ujaldon
The Journal of Supercomputing, 69 (1), July 2014, pp 318-329

Evaluating the SAT Problem on P systems for Different High-Performance Architectures [doi]
J.M. Cecilia, J.M. Garcia, G.D. Guerrero, M. Ujaldon
The Journal of Supercomputing, 69 (1), July 2014, pp 248-272

2013

Towards an Energy Efficient Heterogeneous Processors: Findings on Virtual Screening Methods [doi]
G.D. Guerrero, J.M. Cebrian, H. Perez-Sanchez, J.M. Garcia, M. Ujaldon, J.M. Cecilia
Concurrency and Computation: Practice and Experience, 26 (10), August 2013, pp. 1832-1846

Enhancing GPU Parallelism in Nature-inspired Algorithms [doi]
J.M. Cecilia, A. Nysbet, M. Amos, J.M. Garcia, M. Ujaldon
The Journal of Supercomputing, 63 (3), March 2013, pp 773-789

Enhancing Data Parallelism for Ant Colony Optimization on GPUs [doi]
J.M. Cecilia, J.M. Garcia, A. Nisbet, M. Amos, M. Ujaldon
Journal of Parallel and Distributed Computing, Special Issue on Metaheuristics on GPU, 73 (1), January 2013, pp. 42-51

2012

Efficient Biomarkers for the Characterization of Bone Tissue [doi]
J.E. Gil, J.P. Aranda, E. Merida-Casermeiro, M. Ujaldon
International Journal for Numerical Methods in Biomedical Engineering, 28 (12), December 2012, pp. 1184-1197

Stencil Computations on Heterogeneous Platforms for the Jacobi Method: GPUs versus Cell BE [doi]
J.M. Cecilia, J.L. Abellan, J. Fernandez, M.E. Acacio, J.M. Garcia, M. Ujaldon
The Journal of Supercomputing, 62 (2), November 2012, pp. 787-803

The 2D Wavelet Transform on Emerging Architectures: GPUs and Multicores [doi]
J. Franco, G. Bernabe, J. Fernandez, M. Ujaldon
Journal of Real-Time Image Processing, 7 (3), June 2012, pp. 145-152

The GPU on the Simulation of Cellular Computing Models [doi]
J.M. Cecilia, J.M. Garcia, G.D. Guerrero, M.A. Martinez-del-Amor, M.J. Perez-Jimenez, M. Ujaldon
Soft Computing, 16 (2), February 2012, pp. 231-246

2011

2010

Using GPUs for Accelerating Electromagnetic Simulations [link]
M. Ujaldon
Applied Computational Electromagnetic Society (ACES) Journal, 25 (4), April 2010, pp. 294-302

2009

Stroma Classification for Neuroblastoma on Graphics Processors [doi]
A. Ruiz, O. Sertel, M. Ujaldon, U. Catalyurek, J. Saltz, M. Gurcan
International Journal of Data Mining and Bioinformatics, 3 (3), June 2009, pp. 280-298

Non-rigid Registration for Large Set of Microscopic Images on Graphics Processors [doi]
A. Ruiz, M. Ujaldon, L. Cooper, K. Huang
Journal of Signal Processing Systems (Special Issue on Biomedical Imaging), 55 (1-3), April 2009, pp. 229-250

2008

Recognition of Circular Patterns on GPUs: Performance Analysis and Contributions [doi]
A. Ruiz, N. Guil, M. Ujaldon
Journal of Parallel and Distributed Computing, 68 (10), October 2008, pp. 1329-1338

On the Computation of the Circle Hough Transform by a GPU Rasterizer [doi]
M. Ujaldon, A. Ruiz, N. Guil
Pattern Recognition Letters, 29 (3), February 2008, pp. 309-318

2007

2006

2005

The GPU as an Indirection Engine for a Fast Information Retrieval [doi]
M. Ujaldon, J. Saltz
International Journal of Electronic Business, 3 (3/4), July-August 2005, pp. 316-327

2004

2003

2002

2001

2000

Compile and Run-Time Support for the Parallelization of Sparse Matrix Updating Algorithms [doi]
G. Bandera, M. Ujaldon, E.L. Zapata
The Journal of Supercomputing, 17 (3), November 2000, pp. 263-276

1999

1998

1997

Vienna-Fortran/HPF Extensions for Sparse and Irregular Problems and Their Compilation [doi]
M. Ujaldon, E.L. Zapata, B.M. Chapman, H.P. Zima
IEEE Transactions on Parallel and Distributed Systems, 8 (10), October 1997, pp. 1068-1083

1996

Parallelization Techniques for Sparse Matrix Applications [doi]
M. Ujaldon, E.L. Zapata, S.D. Sharma, J. Saltz
Journal of Parallel and Distributed Computing, 38 (2), November 1996, pp. 256-266

1995

1994

Molecular-Dynamics Simulation on Simple Fluids: Departure from Linearized Hydrodynamic Behavior of the Dynamical Structure Factor [doi]
E. Enciso, N.G. Almarza, V. del Prado, F.J. Bermejo, E.L. Zapata, M. Ujaldon
Physical Review E, 50 (2), August 1994, pp. 1336-1340

1993

Parallel WZ Factorization on Mesh Multiprocessors [doi]
R. Asenjo, M. Ujaldon, E.L. Zapata
Microprocessing and Microprogramming, 38 (1-5), September 1993, pp. 319-326

Journal Papers Author: M. Ujaldon